Searches

Splice Site Prediction by Neural Network

Read Abstract Help

PLEASE NOTE: This server runs the NNSPLICE 0.9 version (January 1997) of the splice site predictor.

Organism: Drosophila Human or other
Search for 5', 3' or both splice sites? 3' 5' both
Include reverse strand? yes no
Minimum score for 5' splice site (between 0 and 1):
Minimum score for 3' splice site (between 0 and 1):

Cut and paste your sequence(s) here: Use single-letter nucleotides: (A, C, G, T).
You can include multiple sequences if each has a FASTA title line starting with >

Please be patient--splice site prediction may take a while.

Training set: Our training and test sets of human and Drosophila melanogaster splice sites are available to the community for testing splice site predictors. They can be obtained from our collection of representative, standardized data sets of human and D. melanogaster genes.

Publication: Reese MG, Eeckman, FH, Kulp, D, Haussler, D, 1997. ``Improved Splice Site Detection in Genie''. J Comp Biol 4(3), 311-23.

Splice site prediction code by Martin G. Reese; web interface by Nomi Harris.